PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g005940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 666aa    MW: 75550.7 Da    PI: 8.8516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g005940.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.45.1e-105235491440
                       HHHHHHHHHHHHHHHHHHT-EEEEEEE CS
            SRF-TF  14 skRrngilKKAeELSvLCdaevaviif 40 
                       sk ++ ++KKA+ LS+LC+++va+ii+
  Sopen10g005940.1 523 SKMQKALFKKASDLSILCGIQVAIIIL 549
                       677899*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037329.0E-8222294IPR005162Retrotransposon gag domain
SuperFamilySSF554552.09E-10523584IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.685523562IPR002100Transcription factor, MADS-box
PfamPF003197.0E-8523549IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MTFRKSCDFS DKDIDVVSAG LSHVGPITRC KFKNSGLDGS EYFTSLEAMK NNKSHTMVVS  60
AKPRDNLASV FSGESSQIGS NSGNSGDTMD SPTSMNVNAL MADSTNMDEK FAMLEQTIEA  120
LKKSVDEKNL HIAQLMNKLK TFTPRESSHV PTCPSGFDQQ NKDVEESLAN SKFQKEKQFA  180
SVAAQPKLQQ FDGKGNPRQH VANFIETCIN AGTHGDLLVK QFVRSLKGNA FDWYIDLEHE  240
SIDSWEQLEK EFLNRFYRTR LAVSMIKLTG TKQRKDEPVV DYINRWRSLS LDAKIVFLKY  300
HLWKCAFREF RKGMTSKTQT TDIIAMKATS VKVTTKSKLK EEEPSPQYPR EERRRPTLKE  360
LEAKVYPFLD ADVPMILEEL LTKKVIDLPE SKRLEEINKV GDPRYCKLHR VLGHPTSKCF  420
ILKKKIMMLE KMIVPVAQVP CIALEPSKGN RQVGKIKGNF DQKVFTLFEK SDYDFSNPAK  480
LGELKDEVTV KKLLCFPVFM ESKNSNVDSA VAKDKRGEGG KISKMQKALF KKASDLSILC  540
GIQVAIIILF INRQPIVFGK PDAESVINQF IEANHPTAPR FYMKMKKKEE ENKEKGKSVE  600
DDIQSQDFES PYLGSLLKLY EGLTEFENQL TKEIDLTQLN QEIEKHEDPK LMNVSSSSTL  660
PTNFSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-09AGAMOUS-like 62